Journal Papers 2000-2011

• Garcia Castro A, Chen Y-PP, Ragan MA: Information integration in molecular bioscience: a review. Applied bioinformatics 2005, 4(3):157-173. URL http://www.ingentaconnect.com/content/adis/abi 

• Garcia Castro A, Samuel Thoraval, Jael Garcia, Ragan MA: Workflows in bioinformatics: meta-analysis and prototype куда пойти в выборге implementation of a workflow generator. BMC 2005,6:87.

  URL http://www.pubmedcentral.nih.gov/articlerender.fcgi?&pubmedid=15813976 

• Garcia Castro A, Rocca-Serra P, Stevens R, Taylor C, Nashar K, Ragan MA, Sansone S: The use of concept maps during knowledge elicitation in ontology development processes - the nutrigenomics use case. BMC 2006, 7:267.

  URL http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1524992 

• Fostel J, Choi D, Zwickl C, Morrison N, Rashid A, Hasan A, Bao W, Richard A, Tong W, Garcia Castro A, Bushel P et al: Chemical effects in biological systems, the data dictionary (CEBS-DD): a compendium of terms for the capture and integration of biological study design description, conventional phenotypes and omics data. Journal of Toxicological Sciences 2005, 88(2):585-601

  URL http://www.ingentaconnect.com/content/oup/toxsci/2005/00000088/00000002/art00585 

• Dasty2, an Ajax protein DAS client. Rafael Jimenez, Kieran O’Neill, Alexander Garcia, Gustavo Salazar, Henning Hermjakob. Bioinformatics, 24(18):2119-21.  http://www.ncbi.nlm.nih.gov/pubmed/18694895 
• ONTODAS, a Gene Ontology query builder for the DAS environment.Kieran O’Neill, Alexander Garcia-Castro, Rafael Jimenez, Anita Schwegmann, Henning Hermjakob. BMC Bioinformatics, October, 2008. http://www.biomedcentral.com/1471-2105/9/437 
• Alexander Garcia Castro, Immanuel Normann, Joana Hois, Oliver Kutz “Ontologizing metadata for assistive technologies: The OASIS repository”.  IEEE Explore, October 2008.
• The Semantic Web and the Social Web heading towards a Living Document in life sciences. Alexander Garcia, Leyla-Jael Garcia, Alberto Labarga, Olga Giraldo, Cesar Montana, John Bateman. Special issue “ The ELSEVIER Grand challenge. Journal of Data and Knowledge Engineering. Elsevier Grand Challenge Semi-Finalist. 
• Dasty3, a modular architecture for the DAS environment. Jose Maria Villaveces, Rafael Jimenez, Leyla Garcia, Bernat Gel, Gustavo Salazar, Alexander Garcia and Henning Hermjakob. Submitted to Bioinformatics, Nov, 2010.
• The DAS WriteBack Server. An Annotation Facility for the DAS Environment. Gustavo Salazar, Rafael Jimenez, Alexander Garcia, Henning Hermjakob,Nicola Mulder, Edwin Blake. Submitted to BMC Bioinformatics.  Nov, 2010. Accepted January 2011.

• Annotating Experimental Records using Ontologies, Alexander Garcia, Olga X Giraldo, Leyla Jael Garcia. Submitted to Journal of Biomedical Semantics, March 2011.

• RDFising Digital Libraries: Towards Interoperable Semantic Digital Libraries. Alexander Garcia, Leyla Garcia. Submitted to  the Journal of Web Semantics, March 2011.